Package: jSDM 0.2.7

jSDM: Joint Species Distribution Models

Fits joint species distribution models ('jSDM') in a hierarchical Bayesian framework (Warton and al. 2015 <doi:10.1016/j.tree.2015.09.007>). The Gibbs sampler is written in 'C++'. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize computation efficiency.

Authors:Ghislain Vieilledent [aut, cre], Jeanne Clément [aut], Frédéric Gosselin [ctb], CIRAD [cph, fnd]

jSDM_0.2.7.tar.gz
jSDM_0.2.7.zip(r-4.5)jSDM_0.2.7.zip(r-4.4)jSDM_0.2.7.zip(r-4.3)
jSDM_0.2.7.tgz(r-4.4-x86_64)jSDM_0.2.7.tgz(r-4.4-arm64)jSDM_0.2.7.tgz(r-4.3-x86_64)jSDM_0.2.7.tgz(r-4.3-arm64)
jSDM_0.2.7.tar.gz(r-4.5-noble)jSDM_0.2.7.tar.gz(r-4.4-noble)
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jSDM.pdf |jSDM.html✨
jSDM/json (API)
NEWS

# Install 'jSDM' in R:
install.packages('jSDM', repos = c('https://ghislainv.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ghislainv/jsdm/issues

Uses libs:
  • gsl– GNU Scientific Library (GSL)
  • openblas– Optimized BLAS
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

12 exports 11 stars 1.59 score 12 dependencies 67 scripts 266 downloads

Last updated 1 years agofrom:5879f4da6e. Checks:OK: 4 NOTE: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 08 2024
R-4.5-win-x86_64NOTESep 08 2024
R-4.5-linux-x86_64NOTESep 08 2024
R-4.4-win-x86_64NOTESep 08 2024
R-4.4-mac-x86_64NOTESep 08 2024
R-4.4-mac-aarch64NOTESep 08 2024
R-4.3-win-x86_64OKSep 08 2024
R-4.3-mac-x86_64OKSep 08 2024
R-4.3-mac-aarch64OKSep 08 2024

Exports:get_enviro_corget_residual_corinv_logitjSDM_binomial_logitjSDM_binomial_probitjSDM_binomial_probit_long_formatjSDM_binomial_probit_sp_constrainedjSDM_gaussianjSDM_poisson_loglogitplot_associationsplot_residual_cor

Dependencies:codacodetoolscorrplotdoParallelforeachiteratorslatticeMASSRcppRcppArmadilloRcppGSLstringi

Bayesian inference methods

Rendered fromproof.Rmdusingknitr::rmarkdownon Sep 08 2024.

Last update: 2022-07-08
Started: 2019-06-05

Get started with jSDM

Rendered fromjSDM.Rmdusingknitr::rmarkdownon Sep 08 2024.

Last update: 2023-03-01
Started: 2019-05-29