Package: jSDM
Type: Package
Title: Joint Species Distribution Models
Version: 0.2.7
Date: 2025-10-31
Imports: Rcpp (>= 1.0.0), graphics, stats, coda, corrplot, stringi,
        MASS, parallel, doParallel, foreach, methods
LinkingTo: Rcpp, RcppArmadillo, RcppGSL
NeedsCompilation: yes
SystemRequirements: GNU GSL
Suggests: knitr, kableExtra, terra, dplyr, rmarkdown, bookdown,
        testthat (>= 3.0.0), boral, Hmsc, ggplot2, covr, ape, gstat
Authors@R: c(
  person("Ghislain", "Vieilledent", role=c("aut", "cre"),
    email="ghislain.vieilledent@cirad.fr",
    comment=c(ORCID="0000-0002-1685-4997")),
  person("Jeanne", "Clément", role="aut",
    email="jeanne.clement16@laposte.net",
    comment=c(ORCID="0000-0002-5228-5015")),
  person("Frédéric", "Gosselin", role="ctb",
    email="frederic.gosselin@inrae.fr", 
    comment=c(ORCID="0000-0003-3737-106X")),
  person("CIRAD", role=c("cph", "fnd"))
  )
Maintainer: Ghislain Vieilledent <ghislain.vieilledent@cirad.fr>
Description: Fits joint species distribution models ('jSDM') in a
        hierarchical Bayesian framework (Warton and al. 2015
        <doi:10.1016/j.tree.2015.09.007>). The Gibbs sampler is written
        in 'C++'. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize
        computation efficiency.
Depends: R (>= 3.5.0)
License: GPL-3
URL: https://ecology.ghislainv.fr/jSDM/,
        https://github.com/ghislainv/jSDM
BugReports: https://github.com/ghislainv/jSDM/issues
LazyLoad: yes
Encoding: UTF-8
RoxygenNote: 7.3.3
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: libgsl0-dev libicu-dev
Repository: https://ghislainv.r-universe.dev
Date/Publication: 2025-11-03 08:42:54 UTC
RemoteUrl: https://github.com/ghislainv/jsdm
RemoteRef: HEAD
RemoteSha: 947f2dd1bae4f5b17eb41e22123001e11137e7a5
Packaged: 2026-07-06 07:46:16 UTC; root
Author: Ghislain Vieilledent [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-1685-4997>),
  Jeanne Clément [aut] (ORCID: <https://orcid.org/0000-0002-5228-5015>),
  Frédéric Gosselin [ctb] (ORCID:
    <https://orcid.org/0000-0003-3737-106X>),
  CIRAD [cph, fnd]